SBMLR (version 1.68.0)

S4toS3: Converts an S4 class SBML object created by rsbml into an S3 object of class SBMLR

Description

This function provides a path from rsbml to SBMLR. The latter, being S3, is less cluttered with empty fields/slots than the former. The advantage of the S4 object is that it comes from more robust SBML reading: rsbml uses libsbml to parse SBML, SBMLR uses the R package XML.

Usage

S4toS3(dom)

Arguments

dom

An S4 DOM object of class SBML produced by rsbml.

Value

Details

Carried over are compartments, species, global parameters, rules and reactions.

Examples

library(rsbml)
(dom <- rsbml_read(file.path(system.file(package="SBMLR"), "models/sod.xml")))
library(SBMLR)
(mod=S4toS3(dom))
summary(mod)