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SC3 (version 1.1.4)

cell_filter: Cell filter

Description

The cell filter should be used if the quality of data is low, i.e. if one suspects that some of the cells may be technical outliers with poor coverage. The cell filter removes cells containing fewer than cell.filter.genes.

Usage

cell_filter(data, cell.filter.genes)

Arguments

data
expression matrix
cell.filter.genes
minimum number of genes that must be expressed in each cell, default is 2,000.

Value

Filtered expression matrix