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SC3 (version 1.1.4)

gene_filter: Gene filter

Description

The gene filter removes genes that are either expressed or absent (expression value is less than 2) in at least X The motivation for the gene filter is that ubiquitous and rare genes most often are not informative for the clustering.

Usage

gene_filter(data, fraction)

Arguments

data
expression matrix
fraction
fraction of cells (1 - X/100), default is 0.06.

Value

filtered expression matrix some genes were removed.