SC3 (version 1.1.4)

get_de_genes: Find differentially expressed genes

Description

If the cell labels are available this functions allows a user to calculate differentially expressed genes manually.

Usage

get_de_genes(dataset, labels, p.val = 0.01)

Arguments

dataset

expression matrix

labels

cell labels corresponding to the columns of the expression matrix

p.val

p-value threshold, by default it is 0.01

Value

a numeric vector containing the differentially expressed genes and correspoding p-values

Examples

d <- get_de_genes(treutlein, colnames(treutlein))
head(d)