SC3 (version 1.1.4)

get_outl_cells: Find cell outliers

Description

If the cell labels are available this functions allows a user to calculate cell outlier scores manually.

Usage

get_outl_cells(dataset, labels, chisq.quantile = 0.9999)

Arguments

dataset

expression matrix

labels

cell labels corresponding to the columns of the expression matrix

chisq.quantile

a threshold of the chi-squared distribution used for cell outliers detection, default is 0.9999

Value

a numeric vector containing the cell labels and correspoding outlier scores ordered by the labels

Examples

d <- get_outl_cells(treutlein, colnames(treutlein))
head(d)