SCENIC (version 1.1.2-01)

getRegulonName: getRegulonName

Description

Gets the regulon name for a given TF (only returns the 'extended' regulons if no directly-annotated regulon is available)

Usage

getRegulonName(TFs, allRegulonNames, sep = " ")

Arguments

TFs

Transcription factor name

allRegulonNames

List of regulon names (e.g. rownames(AUC...))

sep

Character used to separate the TF name, if different from space.

Value

Named character vector

Details

...

See Also

List of vignettes included in the package: vignette(package="SCENIC")

Examples

# NOT RUN {
reguNames <- c("Dlx1 (103g)", "Dlx1_extended (190g)", "Olig2_extended (29g)", "Sox9 (17g)")
getRegulonName("Dlx1", reguNames)
getRegulonName("Olig2", reguNames)
# }