SCENIC (version 1.1.2-01)

importAUCfromText: importAUCfromText

Description

Import AUCell matrix from text format, as generated by pySCENIC

Usage

importAUCfromText(fileName, rows = "regulons", columns = "cells",
  transpose = TRUE, newNames = NULL)

Arguments

fileName

File name of the AUC scores (transposed: gene-sets in rows, cells in columns)

rows

Type of data stored as rows (only for informative purposes) Default: "regulons"

columns

Type of data stored as columns (only for informative purposes) Default: "cells"

transpose

Whether to transpose the input matrix

See Also

pySCENIC (https://pyscenic.readthedocs.io)

Examples

# NOT RUN {
regulonAUC <- importAUCfromText("aucMatrix.tsv")
# }