SCENIC (version 1.1.2-01)

plotTsne_AUCellHtml: plotTsne_AUCellHtml

Description

Wrapper for the 'AUCell_plotTSNE' function: plots the regulon activities on the t-SNE.

Usage

plotTsne_AUCellHtml(scenicOptions, exprMat, fileName, tSNE = NULL)

Arguments

scenicOptions

Fields used: aucell_regulonAUC, aucell_thresholds (int), and if tSNE=NULL the default tSNE.

exprMat

Expression matrix (if NULL, TF expression will not be plotted)

fileName

Location for the plots.

tSNE

If null, it plots the default t-SNE.

Value

NULL. The plots are saved as HTML with the name stored in fileName. If you are using RStudio, you might need to download the .html file and plots folder to view locally.

Examples

# NOT RUN {
plotTsne_AUCellHtml(scenicOptions, exprMat, fileName)
# }