SCENIC (version 1.1.2-01)

runSCENIC_3_scoreCells: runSCENIC_3_scoreCells

Description

Step 3: AUCell (scoring the regulons on the individual cells)

Usage

runSCENIC_3_scoreCells(scenicOptions, exprMat,
  skipBinaryThresholds = FALSE, skipHeatmap = FALSE,
  skipTsne = FALSE)

Arguments

scenicOptions

Fields used: TODO

exprMat

Expression matrix

skipBinaryThresholds

Whether to skip the automatic binarization step

skipHeatmap

Whether to plot the AUC heatmap

skipTsne

Whether to plot the t-SNE

Value

The output is written in the folders 'int' and 'ouput'

Details

See the detailed vignette explaining the internal steps.

Examples

# NOT RUN {
runSCENIC_3_scoreCells(scenicOptions)
# }