SCIntRuler (version 0.99.6)

CalcuSCIR: Calculate SCIntRuler

Description

Calculate SCIntRuler

Usage

CalcuSCIR(fullcluster, seuratlist, testres, p = 0.1)

Value

SCIntRuler

Arguments

fullcluster

A list of clusters that generated by the function GetCluster()

seuratlist

A list of Seurat objects, usually can be got by SplitObject().

testres

Result from function PermTest()

p

P-value that will be used as the cut-off, default value is 0.1

Examples

# \donttest{
data(sim_result)
data(sim_data_sce)
sim_data <- SCEtoSeurat(sim_data_sce)
seuratlist <- Seurat::SplitObject(sim_data, split.by = "Study")
CalcuSCIR(sim_result[[1]], seuratlist, sim_result[[4]])
# }