FindNNDist

The accumulation of single-cell RNA-seq ('scRNA-seq') studies highlights the potential benefits of integrating multiple datasets. By augmenting sample sizes and enhancing analytical robustness, integration can lead to more insightful biological conclusions. However, challenges arise due to the inherent diversity and batch discrepancies within and across studies. 'SCIntRuler', a novel R package, addresses these challenges by guiding the integration of multiple 'scRNA-seq' datasets.

Yue Lyu

SCIntRuler

Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets

FindNNDist function

<dl><dt>fullcluster</dt>
<dd>A list of clusters that generated by the function GetCluster().</dd>
<dt>normCount</dt>
<dd>A list of normalized gene count matrix generated by the function NormData().</dd>
<dt>meaningn</dt>
<dd>default to be 20</dd></dl>

Arguments

Find the nearest neighbors — FindNNDist

<dl>

<dt>fullcluster</dt>
<dd>A list of clusters that generated by the function GetCluster().</dd>


<dt>normCount</dt>
<dd>A list of normalized gene count matrix generated by the function NormData().</dd>


<dt>meaningn</dt>
<dd>default to be 20</dd>

</dl>

FindNNDist: Find the nearest neighbors

Description

Usage

Value

Arguments

Examples