PermTest

The accumulation of single-cell RNA-seq ('scRNA-seq') studies highlights the potential benefits of integrating multiple datasets. By augmenting sample sizes and enhancing analytical robustness, integration can lead to more insightful biological conclusions. However, challenges arise due to the inherent diversity and batch discrepancies within and across studies. 'SCIntRuler', a novel R package, addresses these challenges by guiding the integration of multiple 'scRNA-seq' datasets.

Yue Lyu

SCIntRuler

Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets

PermTest function

<dl><dt>fullcluster</dt>
<dd>A list of clusters that generated by the function GetCluster()</dd>
<dt>distmat</dt>
<dd>A list of distance vectors generated by the function FindNNDist().</dd>
<dt>firstn</dt>
<dd>The number of nearest cells were detected that you want to include in the permutation test.</dd></dl>

Arguments

Permutation Test — PermTest

<dl>

<dt>fullcluster</dt>
<dd>A list of clusters that generated by the function GetCluster()</dd>


<dt>distmat</dt>
<dd>A list of distance vectors generated by the function FindNNDist().</dd>


<dt>firstn</dt>
<dd>The number of nearest cells were detected that you want to include in the permutation test.</dd>

</dl>

PermTest: Permutation Test

Description

Usage

Value

Arguments

Examples