pssm


  This data set includes the Profile scoring matrix derived from the 
  training set compiled from the CC+ coiled-coil database. It is used as the default
  PSSM used by SCORER 2.0 when predicting the oligomeric state of coiled-coil sequences.
  More details on the training set can be found in the reference below.

datasets

This package contains the functions necessary to run the SCORER 2.0 algorithm. SCORER 2.0 can be used to differentiate between parallel dimeric and trimeric coiled-coil sequence, which are the two most more frequent coiled-coil structures observed naturally. As such, SCORER 2.0 is particularly useful for researchers looking to characterize novel coiled-coil sequences. It may also be used to assist in the structural characterization of synthetic coiled-coil sequences. Also included in this package are functions that allows the user to retrain the SCORER 2.0 algorithm using user-defined training data.

pssm: Profile scoring matrix derived from the original SCORER 2.0 training set.

Description

Usage

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Format

Source

References

Examples