infer_initial_trajectory

<code>infer_initial_trajectory</code> infers an initial trajectory for
<code>infer_trajectory</code> by clustering the points and calculating
the shortest path through cluster centers. The shortest path takes into account
the euclidean distance between cluster centers, and the density between those two
points.

An accurate and easy tool for performing linear trajectory inference on
single cells using single-cell RNA sequencing data. In addition, 'SCORPIUS'
provides functions for discovering the most important genes with respect to
the reconstructed trajectory, as well as nice visualisation tools.
Cannoodt et al. (2016) <doi:10.1101/079509>.

Robrecht Cannoodt

SCORPIUS

Inferring Developmental Chronologies from Single-Cell RNA
Sequencing Data

Wouter Saelens

infer_initial_trajectory function

<dl><dt>space</dt>
<dd>A numeric matrix or a data frame containing the coordinates of samples.</dd>
<dt>k</dt>
<dd>The number of clusters</dd></dl>

Arguments

Infer an initial trajectory through space — infer_initial_trajectory

<dl>

<dt>space</dt>
<dd>A numeric matrix or a data frame containing the coordinates of samples.</dd>


<dt>k</dt>
<dd>The number of clusters</dd>

</dl>

infer_initial_trajectory: Infer an initial trajectory through space

Description

Usage

Value

Arguments