prop_barplot

Bar plot of cell type proportions across samples

Streamlined workflow from deconvolution of bulk RNA-seq data to downstream differential expression and gene-set enrichment analysis. Provide various visualization functions.

Yuanhang Liu

SCdeconR

Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq
Data as Reference

prop_barplot function

<dl><dt>prop</dt>
<dd>a matrix or data.frame of cell proportion values with rows representing cell types, columns representing samples.</dd>
<dt>sort</dt>
<dd>a logical value indicating whether to sort the samples based on cell type with highest median cell proportion across samples. Default to TRUE.</dd>
<dt>interactive</dt>
<dd>a logical value indicating whether to generate interactive plot. Default to FALSE.</dd></dl>

Arguments

Bar plot of cell type proportions across samples — prop_barplot

<dl>

<dt>prop</dt>
<dd>a matrix or data.frame of cell proportion values with rows representing cell types, columns representing samples.</dd>


<dt>sort</dt>
<dd>a logical value indicating whether to sort the samples based on cell type with highest median cell proportion across samples. Default to TRUE.</dd>


<dt>interactive</dt>
<dd>a logical value indicating whether to generate interactive plot. Default to FALSE.</dd>

</dl>

prop_barplot: Bar plot of cell type proportions across samples

Description

Usage

Value

Arguments