SCpubr

SCpubr provides a streamlined way of generating publication ready plots for known Single-Cell visualizations in a "publication ready" format (SCpubr). This is, the aim is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Installation

SCpubr can be installed via:

# From CRAN - Official release:
install.packages("SCpubr")

# From GitHub - Latest stable development version:
if(!requireNamespace("devtools", quietly = TRUE)){
  install.packages("devtools") # If not installed.
}

devtools::install_github("enblacar/SCpubr", ref = "v2.0.0-dev-stable")

By default, SCpubr downloads without installing any of the required dependencies. A comprehensive report of which dependencies are still missing and which functions can be run is available through:

SCpubr::package_report(extended = TRUE)

For tutorials, check SCpubr's reference manual.

Updates

SCpubr is an active package currently aiming to improve and add new functionalities.

Keep track of our new updates in the NEWS page!

Citation

To cite SCpubr in your publications, please use:

Blanco-Carmona, E. Generating publication ready visualizations 
for Single Cell transcriptomics using SCpubr. bioRxiv (2022) 
doi:10.1101/2022.02.28.482303.

Contact

scpubr@gmail.com