save_network_big

the augmented network Y with additional nodes (all the original nodes from X must be present in the augmented network Y)

the name of the file to save the network. Note that the file extension will automatically be added

filename

<em>igraph</em> layout function (default=layout.kamada.kawai)

layout

the taxon name of the nodes added to the original graph. By default, we select all nodes that are not in g1. Note that in order to display all the different taxa groups, you must use 'allgroup' as the <em>taxnames</em> argument

taxnames

type of file to create either: 'png', 'svg', or 'eps' (default='png')

mode

size of the image in pixels (default=2500 px)

imagesize

This function save to file a representation of the networks. Note that it will be automatically called by the save_network function.

Compares the evolution of an original network X to an augmented network Y by counting the number of Shortcuts, Detours, Dead Ends (SDDE), equal paths and disconnected nodes. 

save_network_big: Helper function to save an illustration of a network to file with more than 50 nodes.

Description

Usage

Arguments

encoding