SDMtune (version 1.3.3)

plotVarImp: Plot Variable Importance

Description

Plot the variable importance as a bar plot.

Usage

plotVarImp(df, color = "grey")

Value

A ggplot object.

Arguments

df

data.frame. A data.frame containing the the name of the variables as first column and the value of the variable importance as second column.

color

character. The colour of the bar plot.

Author

Sergio Vignali

Examples

# Acquire environmental variables
files <- list.files(path = file.path(system.file(package = "dismo"), "ex"),
                    pattern = "grd",
                    full.names = TRUE)

predictors <- terra::rast(files)

# Prepare presence and background locations
p_coords <- virtualSp$presence
bg_coords <- virtualSp$background

# Create SWD object
data <- prepareSWD(species = "Virtual species",
                   p = p_coords,
                   a = bg_coords,
                   env = predictors,
                   categorical = "biome")

# Train a model
model <- train(method = "Maxnet",
               data = data,
               fc = "l")

# Compute variable importance
vi <- varImp(model,
             permut = 1)

# Plot variable importance
plotVarImp(vi)

# Plot variable importance with custom color
plotVarImp(vi,
           color = "red")