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SEERaBomb (version 2016.2)

SEER and Atomic Bomb Survivor Data Analysis Tools

Description

Creates SEER (Surveillance, Epidemiology and End Results) and A-bomb data binaries from ASCII sources and provides tools for estimating SEER second cancer risks.

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Version

Install

install.packages('SEERaBomb')

Monthly Downloads

224

Version

2016.2

License

GPL (>= 2)

Maintainer

Tomas Radivoyevitch

Last Published

November 11th, 2016

Functions in SEERaBomb (2016.2)

Cancer risk vs years Since Diagnosis of other cancer

Map registry codes to acronyms

Get tsd interval PY

Map ICD9 and ICD-O3 codes to cancers

Gets the lower and upper limit and index of a tsd bin

Converts a seerSet$L series to a data.frame

Map treatment codes to factor

Fills age-year person year (PY) matrix

Get expected numbers of cases

Get fields from SEER SAS file

Make Abomb SQLite database

Make SEER binaries as before

Make R binaries of SEER data.

Make 2D-spline fits of incidences

Make RR Excel file from csd output

Make RR Excel file from tsd function output

Converts seerSet$L series to a data.frame

National Vital Statistic Report (nvsr) Data

National Vital Statistic Report (nvsr01) Data

Mortality vs years Since Diagnosis

Get person-years at risk and observed cases after first cancers

Get person-years at risk and observed deaths after cancer

SEERaBomb-package

SEER and A-Bomb Data Analysis Tools

Chromosome translocation versus age data

Summarize SEER data.

Get person-years at risk and observed cases after first cancers

Join SEER cancers and PY

Plot 2D cancer incidence splines

print.seerSet.summary

Prints seerSet.summary objects

The standard population of the US in 2000

summary.seerSet

Summary of seerSet object

Simulate SEER cancers and population person years

Pick SEER fields of interest

Compute RR vs tsd