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SEERaBomb (version 2018.1)

SEER and Atomic Bomb Survivor Data Analysis Tools

Description

Creates SEER (Surveillance, Epidemiology and End Results) and A-bomb data binaries from ASCII sources and provides tools for estimating SEER second cancer risks.

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Version

Install

install.packages('SEERaBomb')

Monthly Downloads

243

Version

2018.1

License

GPL (>= 2)

Maintainer

Tomas Radivoyevitch

Last Published

May 11th, 2018

Functions in SEERaBomb (2018.1)

post1PYO

Get person-years at risk and observed cases after first cancers
esd

Event vs years Since Diagnosis
Sigurdson

Chromosome translocation versus age data
mapRegs

Map registry codes to acronyms
mk2D

Make 2D-spline fits of incidences
mkDemographics

Make Demographics Tables
p2s

Primary to Secondary
riskVsAge

Second cancer risk vs attained age after first cancer
getFields

Get fields from SEER SAS file
mkExcelTsd

Make RR Excel file from tsd function output
mapTrts

Map treatment codes to factor
mkMrt

Make mortality binaries
seerSet

Join SEER cancers and PY
incidSEER

Computes SEER incidences
fillPYM

Fills age-year person year (PY) matrix
mkAbomb

Make Abomb Binaries
plot2D

Plot 2D cancer incidence splines
mapCODs

Map CODs to strings
seerStats

Summarize SEER data.
getE

Get expected numbers of cases
mkSEER

Make R binaries of SEER data.
post1PYOm

Get person-years at risk and observed deaths after cancer
mkSEERold

Make SEER binaries as before
simSeerSet

Simulate SEER cancers and population person years
mkExcelCsd

Make RR Excel file from csd output
incidAbomb

Computes A-bomb incidences
mkDF

Converts seerSet$L series to a data.frame
msd

Mortality vs years Since Diagnosis
getPY

Get tsd interval PY
stdUS

The standard population of the US in 2000
print.seerSet.summary

Prints seerSet.summary objects
summary.seerSet

Summary of seerSet object
pickFields

Pick SEER fields of interest
nvsr

National Vital Statistic Report (nvsr) Data
tsd

Compute RR vs tsd
post1PYOc

Get person-years at risk and observed cases after first cancers
SEERaBomb-package

SEER and A-Bomb Data Analysis Tools
getBinInfo

Gets the lower and upper limit and index of a tsd bin
csd

Cancer risk vs years Since Diagnosis of other cancer
canc2py

Converts canc made by mkSEER into a data.frame with py at risk after firsts
mapCancs

Map ICD9 and ICD-O3 codes to cancers
getDF

Converts a seerSet$L series to a data.frame
nvsr01

National Vital Statistic Report (nvsr01) Data