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SEPA (version 1.2.2)

patternsummary: patternsummary

Description

Count table for pattern

Usage

patternsummary(pattern)

Arguments

pattern
The direct output of truetimepattern or pseudotimepattern function.

Value

A data.frame object. First column: pattern; Second column: number of genes

Details

This function generates a count table of number of genes with each pattern.

Examples

Run this code
data(HSMMdata)
pattern <- truetimepattern(HSMMdata,truetime,removeconstant=TRUE)
patternsummary(pattern)

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