
query
are annotated with respect to transcript
features in subject
.
annotate(query, subject)
SGFeatures
, SGVariants
,
SGFeatureCounts
or SGVariantCounts
objectTxFeatures
objectquery
with updated txName
, geneName
column slots
Feature matching is performed as follows: Query splice junctions are matched with identical subject splice junctions. Query splice sites are matched with splice sites implied by subject splice junctions. Query exon bins are matched with overlapping subject exons. Spliced boundaries of query exon bins must match spliced subject exon boundaries. Query exon bins cannot extend across spliced subject exon boundaries.
sgf_annotated <- annotate(sgf, txf)
sgv_annotated <- annotate(sgv, txf)
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