SGSeq (version 1.2.2)

predictCandidatesTerminal: Identify candidate terminal exons

Description

Identify candidate terminal exons based on previously identified splice junctions and regions with sufficient read coverage.

Usage

predictCandidatesTerminal(junctions, islands, type = c("exon_L", "exon_R"))

Arguments

junctions

IRanges of splice junctions

islands

IRanges of genomic regions with minimal read coverage required for internal exon prediction

type

Character string indicating whether terminal exons should be identified to the left (“exon_L”) or right (“exon_R”) of provided splice junctions

Value

IRanges of candidate terminal exons