Learn R Programming

SGSeq (version 1.6.5)

SGVariantCounts: Splice graph variant counts

Description

Creates an instance of S4 class SGVariantCounts for storing splice variant counts.

Usage

SGVariantCounts(x)

Arguments

x
RangedSummarizedExperiment with SGVariants as rowRanges and assays “variantFreq”, “countsVariant5p”, “countsVariant3p”, “countsEvent5p”, “countsEvent3p”, and optionally “countsVariant5pOr3p”

Value

SGVariantCounts object

Examples

Run this code
sgvc <- SGVariantCounts()

Run the code above in your browser using DataLab