check_code_proj

<a href="https://lifecycle.r-lib.org/articles/stages.html#deprecated"><img src="figures/lifecycle-deprecated.svg?package=SHARK4R&version=1.0.2" alt="[Deprecated]"></a>
This function is deprecated and has been replaced by <code>check_codes()</code>.

internal

Provides functions to retrieve, process, analyze, and
quality-control marine physical, chemical, and biological data. The
main focus is on Swedish monitoring data available through the 'SHARK'
database <https://shark.smhi.se/en/>, with additional API support for 'Nordic
Microalgae' <https://nordicmicroalgae.org/>, 'Dyntaxa'
<https://artfakta.se/>, World Register of Marine Species ('WoRMS') <https://www.marinespecies.org>,
'AlgaeBase' <https://www.algaebase.org>, OBIS 'xylookup' web service
<https://iobis.github.io/xylookup/> and Intergovernmental Oceanographic Commission (IOC) -
UNESCO databases on harmful algae <https://www.marinespecies.org/hab/> and toxins
<https://toxins.hais.ioc-unesco.org/>.

Anders Torstensson

SHARK4R

Accessing and Validating Marine Environmental Data from 'SHARK'
and Related Databases

Markus Lindh

Mikael Hedblom

Bengt Karlson

SHARK 

SBDI 

check_code_proj function

<dl><dt>data</dt>
<dd>for tibble be be checked</dd>
<dt>field</dt>
<dd>Character; name of the column in <code>data</code> that contains the codes
to be validated against the SHARK codelist. If a cell contains multiple
codes separated by commas, each code is validated separately.
Default is <code>"sample_project_name_en"</code>.</dd>
<dt>clean_cache_days</dt>
<dd>Numeric; if not NULL, cached SHARK code Excel files older than
this number of days will be automatically deleted and be replaced by a new download.
Defaults to 30. Set to NULL to disable automatic cleanup.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#deprecated'><img src='figures/lifecycle-deprecated.svg' alt='[Deprecated]' /></a>
This function is deprecated and has been replaced by <code>check_codes()</code>.

Check matches of reported codes in SMHI's SHARK codelist — check_code_proj

<dl>

<dt>data</dt>
<dd>for tibble be be checked</dd>


<dt>field</dt>
<dd>Character; name of the column in <code>data</code> that contains the codes
to be validated against the SHARK codelist. If a cell contains multiple
codes separated by commas, each code is validated separately.
Default is <code>"sample_project_name_en"</code>.</dd>


<dt>clean_cache_days</dt>
<dd>Numeric; if not NULL, cached SHARK code Excel files older than
this number of days will be automatically deleted and be replaced by a new download.
Defaults to 30. Set to NULL to disable automatic cleanup.</dd>

</dl>

check_code_proj: Check matches of reported codes in SMHI's SHARK codelist

Description

Usage

Value

Arguments

See Also