SHARK4R (version 1.1.1)

check_setup: Download and set up SHARK4R support files

Description

This function downloads the products folder from the SHARK4R GitHub repository and places them in a user-specified directory. These folders contain Shiny applications and R Markdown documents used for quality control (QC) of SHARK data.

Usage

check_setup(path, run_app = FALSE, force = FALSE, verbose = TRUE)

Value

An (invisible) list with the path to the local products folder:

Arguments

path

Character string giving the directory where the products folder should be created. Must be provided by the user.

run_app

Logical, if TRUE runs the QC Shiny app located in the products folder after setup. Default is FALSE.

force

Logical, if TRUE forces a re-download and overwrites existing folder. Default is FALSE.

verbose

Logical, if TRUE prints progress messages. Default is TRUE.

Details

If the path folders already exist, the download will be skipped unless force = TRUE is specified. Optionally, the function can launch the QC Shiny app directly after setup.

Examples

# \donttest{
# Download support files into a temporary directory
try(check_setup(path = tempdir()))

# Force re-download if already present
try(check_setup(path = tempdir(), force = TRUE))

# Download and run the QC Shiny app
if(interactive()){
 try(check_setup(path = tempdir(), run_app = TRUE))
}
# }