Pathway_similarity

Expression matrix of genes in the 1st group of sampls

ExpMat1

Expression matrix of genes in the 2nd group of sampls

ExpMat2

Name of genes in the same order as considered in ExpMat1 and ExpMat2

GeneVec

GeneSets

Name used for naming the columns of output matrix of correlation between the 2 groups

Name

Pathway_similarity is a function for calculating correlation between expression level of pathways
 between 2 groups using all the available approaches in SIGN

Provides a classification framework to use expression patterns of pathways as features to identify similarity between biological samples. It provides a new measure for quantifying similarity between expression patterns of pathways.

Benjamin HaibeKains

SIGN

Similarity Identification in Gene Expression

Seyed Ali Madani Tonekaboni

Gangesh Beri

Janosch Ortmann

Benjamin Haibe-Kains

Pathway_similarity function

Pathway_similarity is a function for calculating correlation between expression level of pathways
 between 2 groups using all the available approaches in SIGN — Pathway_similarity

Pathway_similarity is a function for calculating correlation between expression level of pathways
 between 2 groups using all the available approaches in SIGN

Pathway_similarity: Pathway_similarity is a function for calculating correlation between expression level of pathways between 2 groups using all the available approaches in SIGN

Description

Usage

Arguments

Value