SIGN_Ensemble_SimCal

List of expression matrices for different groups of samples
used in the centroid classification scheme

ExpList

Names of the matrices in the ExpList

RefClassID

ID of a matrix in ExpList to be used as test set

TestClassID

Parameter to determine if gene annotations are provided as Symbols or EntrezIDs

GeneID

List of pathways containing gene annotations for each pathways

PathwaySets

SIGN_Ensemble_SimCal is a function for Generating list fo similarities based on 
different pathway quantification methods and similarity measures

Provides a classification framework to use expression patterns of pathways as features to identify similarity between biological samples. It provides a new measure for quantifying similarity between expression patterns of pathways.

Benjamin HaibeKains

SIGN

Similarity Identification in Gene Expression

Seyed Ali Madani Tonekaboni

Gangesh Beri

Janosch Ortmann

Benjamin Haibe-Kains

SIGN_Ensemble_SimCal function

SIGN_Ensemble_SimCal is a function for Generating list fo similarities based on 
different pathway quantification methods and similarity measures — SIGN_Ensemble_SimCal

SIGN_Ensemble_SimCal: SIGN_Ensemble_SimCal is a function for Generating list fo similarities based on different pathway quantification methods and similarity measures

Description

Usage

Arguments

Value