summaryComponents

Compute a tidy summary of simplivariate Components found by SIMPLICA.
Returns a data.frame with class <code>"summaryComponents"</code> and an attribute holding
row/column index lists for printing details.

Identifies constant, additive, multiplicative, and user-defined
simplivariate components in numeric data matrices using a genetic algorithm.
Supports flexible pattern definitions and provides visualization for
general biclustering applications across diverse domains. The method builds
on simplivariate models as introduced in Hageman et al. (2008)
<doi:10.1371/journal.pone.0003259> and is related to biclustering
frameworks as reviewed by Madeira and Oliveira (2004) <doi:10.1109/TCBB.2004.2>.

Jos Hageman

SIMPLICA

Biclustering via Simplivariate Component Analysis

summaryComponents function

<dl><dt>results</dt>
<dd>A list or 'simplica' object with fields:
<code>nRows</code>, <code>nCols</code>, <code>string</code>, <code>componentScores</code>,
and either <code>componentPatternsUpdated</code> or <code>componentPatterns</code>.</dd>
<dt>scoreCutoff</dt>
<dd>Numeric. Minimum score to include a component (default 0).</dd></dl>

Arguments

Summarize GA-found Simplivariate Components — summaryComponents

<dl>

<dt>results</dt>
<dd>A list or 'simplica' object with fields:
<code>nRows</code>, <code>nCols</code>, <code>string</code>, <code>componentScores</code>,
and either <code>componentPatternsUpdated</code> or <code>componentPatterns</code>.</dd>


<dt>scoreCutoff</dt>
<dd>Numeric. Minimum score to include a component (default 0).</dd>

</dl>

summaryComponents: Summarize GA-found Simplivariate Components

Description

Usage

Value

Arguments