SIMplyBee (version 0.4.1)

combine: Combine two colony objects

Description

Level 2 function that combines two Colony or MultiColony objects into one or two colonies objects of the same length to one. For example, to combine a weak and a strong colony (or MultiColony). Workers and drones of the weak colony are added to the strong. User has to remove the weak colony (or MultiColony) from the workspace.

Usage

combine(strong, weak)

Value

a combined Colony-class or MultiColony-class

Arguments

strong

Colony-class or MultiColony-class

weak

Colony-class or MultiColony-class

Examples

founderGenomes <- quickHaplo(nInd = 10, nChr = 1, segSites = 50)
SP <- SimParamBee$new(founderGenomes)
SP$nThreads = 1L
basePop <- createVirginQueens(founderGenomes)
drones <- createDrones(basePop[1], n = 1000)
droneGroups <- pullDroneGroupsFromDCA(drones, n = 10, nDrones = 10)

# Create weak and strong Colony and MultiColony class
colony1 <- createColony(x = basePop[2])
colony1 <- cross(colony1, drones = droneGroups[[1]])
colony2 <- createColony(x = basePop[3])
colony2 <- cross(colony2, drones = droneGroups[[2]])
apiary1 <- createMultiColony(basePop[4:6], n = 3)
apiary1 <- cross(apiary1, drones = droneGroups[3:5])
apiary2 <- createMultiColony(basePop[7:9], n = 3)
apiary2 <- cross(apiary2, drones = droneGroups[6:8])

# Build-up
colony1 <- buildUp(x = colony1, nWorkers = 100, nDrones = 20)
colony2 <- buildUp(x = colony2, nWorkers = 20, nDrones = 5)
apiary1 <- buildUp(x = apiary1, nWorkers = 100, nDrones = 20)
apiary2 <- buildUp(x = apiary2, nWorkers = 20, nDrones = 5)

# Combine
nWorkers(colony1); nWorkers(colony2)
nDrones(colony1); nDrones(colony2)
colony1 <- combine(strong = colony1, weak = colony2)
nWorkers(colony1); nWorkers(colony2)
nDrones(colony1); nDrones(colony2)
rm(colony2)

nWorkers(apiary1); nWorkers(apiary2)
nDrones(apiary1); nDrones(apiary2)
apiary1 <- combine(strong = apiary1, weak = apiary2)
nWorkers(apiary1); nWorkers(apiary2)
nDrones(apiary1); nDrones(apiary2)
rm(apiary2)