SIMplyBee (version 0.4.1)

isCaste: Is individual a member of a specific caste

Description

Level 0 function that tests if individuals are members of a specific caste

Usage

isCaste(x, caste, simParamBee = NULL)
isQueen(x, simParamBee = NULL)
isFather(x, simParamBee = NULL)
isWorker(x, simParamBee = NULL)
isDrone(x, simParamBee = NULL)
isVirginQueens(x, simParamBee = NULL)
isVirginQueen(x, simParamBee = NULL)

Value

logical

Arguments

x

Pop-class

caste

character, one of "queen", "fathers", "workers", "drones", or "virginQueens"; only single value is used

simParamBee

SimParamBee, global simulation parameters

Functions

• isQueen(): Is individual a queen

• isFather(): Is individual a father

• isWorker(): Is individual a worker

• isDrone(): Is individual a drone

• isVirginQueens(): Is individual a virgin queen

• isVirginQueen(): Is individual a virgin queen

See Also

isQueen, isFather, isVirginQueen, isWorker, and isDrone

Examples

founderGenomes <- quickHaplo(nInd = 8, nChr = 1, segSites = 100)
SP <- SimParamBee$new(founderGenomes)
SP$nThreads = 1L
basePop <- createVirginQueens(founderGenomes)

drones <- createDrones(x = basePop[1], nInd = 1000)
droneGroups <- pullDroneGroupsFromDCA(drones, n = 10, nDrones = nFathersPoisson)

# Create a Colony class
colony <- createColony(x = basePop[2])
colony <- cross(colony, drones = droneGroups[[1]])
colony <- buildUp(x = colony, nWorkers = 120, nDrones = 20)
colony <- addVirginQueens(x = colony, nInd = 4)

isCaste(getQueen(colony), caste = "queen")
isCaste(getFathers(colony, nInd = 2), caste = "fathers")
isCaste(getWorkers(colony, nInd = 2), caste = "workers") # random sample!
isCaste(getDrones(colony, nInd = 2), caste = "drones")
isCaste(getVirginQueens(colony, nInd = 2), caste = "virginQueens")

bees <- c(
  getQueen(colony),
  getFathers(colony, nInd = 2),
  getWorkers(colony, nInd = 2),
  getDrones(colony, nInd = 2),
  getVirginQueens(colony, nInd = 2)
)
isCaste(bees, caste = "queen")
isCaste(bees, caste = "fathers")
isCaste(bees, caste = "workers")
isCaste(bees, caste = "drones")
isCaste(bees, caste = "virginQueens")

isQueen(getQueen(colony))
isQueen(getFathers(colony, nInd = 2))

isFather(getQueen(colony))
isFather(getFathers(colony, nInd = 2))

isWorker(getQueen(colony))
isWorker(getFathers(colony, nInd = 2))
isWorker(getWorkers(colony, nInd = 2))

isDrone(getQueen(colony))
isDrone(getFathers(colony, nInd = 2))
isDrone(getDrones(colony, nInd = 2))

isVirginQueen(getQueen(colony))
isVirginQueen(getFathers(colony, nInd = 2))
isVirginQueen(getVirginQueens(colony, nInd = 2))