mapLoci

Finds loci on a genetic map and return a list of positions.
This function is adopted from AlphaSimR (Gaynor et al., 2021)

An extension of the 'AlphaSimR' package
(<https://cran.r-project.org/package=AlphaSimR>) for stochastic simulations of
honeybee populations and breeding programmes. 'SIMplyBee' enables simulation of
individual bees that form a colony, which includes a queen, fathers (drones
the queen mated with), virgin queens, workers, and drones. Multiple colony can
be merged into a population of colonies, such as an apiary or a whole country
of colonies. Functions enable operations on castes, colony, or colonies, to
ease 'R' scripting of whole populations. All 'AlphaSimR' functionality with
respect to genomes and genetic and phenotype values is available and further
extended for honeybees, including haplo-diploidy, complementary sex determiner
locus, colony events (swarming, supersedure, etc.), and colony phenotype values.

Jana Obšteter

SIMplyBee

'AlphaSimR' Extension for Simulating Honeybee Populations and
Breeding Programmes

Laura Strachan

Jernej Bubnič

Gregor Gorjanc

mapLoci function

<dl><dt>markers</dt>
<dd>character, vector of marker positions as "chr_position"</dd>
<dt>genMap</dt>
<dd>list, genetic map</dd></dl>

Arguments

Finds loci on a genetic map and return a list of positions — mapLoci

<dl>

<dt>markers</dt>
<dd>character, vector of marker positions as "chr_position"</dd>


<dt>genMap</dt>
<dd>list, genetic map</dd>

</dl>

mapLoci: Finds loci on a genetic map and return a list of positions

Description

Usage

Value

Arguments