calc_Mheavymax_MAGs

This script was adapted from https://github.com/buckleylab/HTSSIP/blob/master/R/qSIP_atom_excess.R
for use with genome-centric metagenomics. See Hungate et al., 2015 for more details

Statistical analysis as part of a quantitative stable isotope
probing (SIP) metagenomics study to identify isotope incorporating
metagenomic features. Helpful reading and a vignette in bookdown
format is provided on the package site
<https://zielslab.github.io/SIPmg.github.io/>.

Pranav Sampara

SIPmg

Statistical Analysis to Identify Isotope Incorporating
Metagenomic Features

Kate Waring

Ryan Ziels

Alma Garcia Roche

calc_Mheavymax_MAGs function

<dl><dt>Mlight</dt>
<dd>The molecular wight of unlabeled DNA</dd>
<dt>isotope</dt>
<dd>The isotope for which the DNA is labeled with ('13C' or '18O' or '15N')</dd>
<dt>Gi</dt>
<dd>The G+C content of unlabeled DNA</dd></dl>

Arguments

Calculate Mheavymax — calc_Mheavymax_MAGs

<dl>

<dt>Mlight</dt>
<dd>The molecular wight of unlabeled DNA</dd>


<dt>isotope</dt>
<dd>The isotope for which the DNA is labeled with ('13C' or '18O' or '15N')</dd>


<dt>Gi</dt>
<dd>The G+C content of unlabeled DNA</dd>

</dl>

calc_Mheavymax_MAGs: Calculate Mheavymax

Description

Usage

Value

Arguments