calc_atom_excess_MAGs

See Hungate et al., 2015 for more details

Statistical analysis as part of a quantitative stable isotope
probing (SIP) metagenomics study to identify isotope incorporating
metagenomic features. Helpful reading and a vignette in bookdown
format is provided on the package site
<https://zielslab.github.io/SIPmg.github.io/>.

Pranav Sampara

SIPmg

Statistical Analysis to Identify Isotope Incorporating
Metagenomic Features

Kate Waring

Ryan Ziels

Alma Garcia Roche

calc_atom_excess_MAGs function

<dl><dt>Mlab</dt>
<dd>The molecular wight of labeled DNA</dd>
<dt>Mlight</dt>
<dd>The molecular wight of unlabeled DNA</dd>
<dt>Mheavymax</dt>
<dd>The theoretical maximum molecular weight of fully-labeled DNA</dd>
<dt>isotope</dt>
<dd>The isotope for which the DNA is labeled with ('13C', '18O', '15N')</dd></dl>

Arguments

Calculate atom fraction excess — calc_atom_excess_MAGs

<dl>

<dt>Mlab</dt>
<dd>The molecular wight of labeled DNA</dd>


<dt>Mlight</dt>
<dd>The molecular wight of unlabeled DNA</dd>


<dt>Mheavymax</dt>
<dd>The theoretical maximum molecular weight of fully-labeled DNA</dd>


<dt>isotope</dt>
<dd>The isotope for which the DNA is labeled with ('13C', '18O', '15N')</dd>

</dl>

calc_atom_excess_MAGs: Calculate atom fraction excess

Description

Usage

Value

Arguments