SIPmg (version 3.0)

phylo.table: Master phyloseq object using the MAG phyloseq objects

Description

Creates a phyloseq-style object using processed phyloseq objects for otu table (here, MAG table), taxa table, and sample table

Usage

phylo.table(mag, taxa, samples)

Value

phyloseq object for MAGs

Arguments

mag

phyloseq-styled MAG table

taxa

phyloseq-styled taxa table

samples

sample information table

Examples

data(mag.table,taxonomy.object,samples.object,fractions,taxonomy_tibble)
###Making phyloseq table from fractions metadata
samples.object = sample.table(fractions)
taxonomy.object = tax.table(taxonomy_tibble)


# \donttest{

### Making master phyloseq table from scaled MAG data, taxa and fractions phyloseq data
phylo.qSIP = phylo.table(mag.table,taxonomy.object,samples.object)
# }