phyloseq2df

Conducts conversion of 1 of the data objects
in a phyloseq object (eg., tax_table) to a dataframe

Statistical analysis as part of a quantitative stable isotope
probing (SIP) metagenomics study to identify isotope incorporating
metagenomic features. Helpful reading and a vignette in bookdown
format is provided on the package site
<https://zielslab.github.io/SIPmg.github.io/>.

Pranav Sampara

SIPmg

Statistical Analysis to Identify Isotope Incorporating
Metagenomic Features

Kate Waring

Ryan Ziels

Alma Garcia Roche

phyloseq2df function

<dl><dt>physeq</dt>
<dd>Phyloseq object</dd>
<dt>table_func</dt>
<dd>See <code>Phyloseq::phyloseq-class</code> for options</dd></dl>

Arguments

The following function is adapted from HTSSIP R package
phyloseq data object conversion to data.frame — phyloseq2df

<dl>

<dt>physeq</dt>
<dd>Phyloseq object</dd>


<dt>table_func</dt>
<dd>See <code>Phyloseq::phyloseq-class</code> for options</dd>

</dl>

phyloseq2df: The following function is adapted from HTSSIP R package phyloseq data object conversion to data.frame

Description

Usage

Value

Arguments