community_attack_rate

Computes the community attack rate for a a cohort using the
 value of a call to <code>household_transmission</code>.

We build an Susceptible-Infectious-Recovered (SIR) model where the rate of infection is the sum of the household rate and the community rate. We estimate the posterior distribution of the parameters using the Metropolis algorithm. Further details may be found in: F Scott Dahlgren, Ivo M Foppa, Melissa S Stockwell, Celibell Y Vargas, Philip LaRussa, Carrie Reed (2021) "Household transmission of influenza A and B within a prospective cohort during the 2013-2014 and 2014-2015 seasons" <doi:10.1002/sim.9181>.

F Dahlgren

SIRmcmc

Compartmental Susceptible-Infectious-Recovered (SIR) Model of
Community and Household Infection

community_attack_rate function

<dl> <dt>SIRmcmc</dt>
<dd>The value of a call to <code>household_transmission</code>.</dd> <dt>probs</dt>
<dd>A numeric vector of the quantiles of the posterior distribution. The
 default is the median and the central 95% credible region.</dd></dl>

Arguments

Compute the community attack rate — community_attack_rate

<dl>

 <dt>SIRmcmc</dt>
<dd>The value of a call to <code>household_transmission</code>.</dd>

 <dt>probs</dt>
<dd>A numeric vector of the quantiles of the posterior distribution. The
 default is the median and the central 95% credible region.</dd>

</dl>

community_attack_rate: Compute the community attack rate

Description

Usage

Value

Arguments

Details