Learn R Programming

Authors: - Bhakti Dwivedi (1) - Jeanne Kowalski (1,2)

Maintainer: - Bhakti Dwivedi bhakti.dwivedi@emory.com

Affiliations: (1) Winship Cancer Institute, Emory University, Atlanta, GA, 30322, USA (2) Department of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, GA 30322, USA

Installation: To install, run the following command from R console: {r} source("https://bioconductor.org/biocLite.R") biocLite("SISPA") Getting Started: See ./vignettes/SISPA.pdf

Copy Link

Version

Version

1.2.2

License

GPL-2

Maintainer

Bhakti Dwivedi

Last Published

February 15th, 2017

Functions in SISPA (1.2.2)

gene_list

an example file containing the list of input genes
callGSVA

GSVA enrichment analysis
variant_data

An example of RNAseq derived gene variant change data
cptSamples

Sample profile identifier analysis
callZSCORE

Row ZSCORES
SISPA

SISPA
expression_data

An example of RNAseq derived gene expression data
freqplot

A plotting function for SISPA sample identifiers
waterfallplot

A plotting function for SISPA sample identifiers
sortData

Sorts the data by a column
variant_list

an example file containing the list of input genes variants