plotSlice

A list which is the output of <code><a rd-options="" href="/link/simulateTumor?package=SITH&version=1.1.0" data-mini-rdoc="SITH::simulateTumor">simulateTumor</a>()</code>.

tumor

One of "x", "y" or "z", which denotes the dimension which will be fixed to obtain a 2D cross section.

slice.dim

Which value will the dimension given in <code>slice.dim</code> be fixed at?

level

Which type of plot to draw. "Normal" assigns a random rgb value to each genotype while
"heat" colors cells with more mutations red and cells with fewer mutations blue. This is exactly the same as <code>plot.type</code>
in <code>visualizeTumor</code>.

plot.type

2D cross section of the simulated tumor.

Implements a three-dimensional stochastic model of cancer growth and mutation similar to the one described in Waclaw et al. (2015) <doi:10.1038/nature14971>. Allows for interactive 3D visualizations of the simulated tumor. Provides a comprehensive summary of the spatial distribution of mutants within the tumor. Contains functions which create synthetic sequencing datasets from the generated tumor.

Phillip Nicol

SITH

A Spatial Model of Intra-Tumor Heterogeneity

plotSlice function

A list which is the output of <code><a rd-options='' href='simulateTumor'>simulateTumor</a>()</code>.

plotSlice: 2D cross section of the simulated tumor

Description

Usage

Arguments

Value