SKAT.fam.example

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.

Seunggeun Shawn Lee

SKAT

SNP-Set (Sequence) Kernel Association Test

SKAT.fam.example function

Example contains the following objects:<dl class="dl-horizontal">
 <dt>Z</dt><dd>a numeric genotype matrix 
	Each row represents a different individual, and each column represents a different SNP marker.</dd>
 <dt>X</dt><dd>a numeric matrix of covariates.</dd>
 <dt>y</dt><dd>a numeric vector of continuous phenotypes.</dd>
 <dt>K</dt><dd>a kinship matrix.</dd>
 </dl>

Format

Example data for SKAT_NULL_emmaX — SKAT.fam.example

Example contains the following objects:<dl class='dl-horizontal'>
 <dt>Z</dt><dd>a numeric genotype matrix 
	Each row represents a different individual, and each column represents a different SNP marker.</dd>
 <dt>X</dt><dd>a numeric matrix of covariates.</dd>
 <dt>y</dt><dd>a numeric vector of continuous phenotypes.</dd>
 <dt>K</dt><dd>a kinship matrix.</dd>
 </dl>

SKAT.fam.example: Example data for SKAT_NULL_emmaX

Description

Arguments

Format