SLGI (version 1.32.0)

getSharedInteraction: Calculate the number of shared synthetic genetic interactions between pairs of genes.

Description

The number of common synthetic genetic interacting partners between two genes.

Usage

getSharedInteraction(iMat, mode="query")

Arguments

iMat

Adjacency matrix reporting genetic Interactions. Each entry has value 0 or 1, representing positive or negative interaction of corresponding pairs of row and column, respectively.

mode

Character vector of value "query" or "target"

Value

A numeric vector of the number of common genetic interactions between a pair of query or target genes.

See Also

congruence

Examples

intM <- matrix(c(0,1,0,0,1,1,1,0,1,0,0,1,1,0,1,0),
                nrow=4, ncol=4, 
                dimnames=list(c("p1","p2","p3","p4"),
                  c("p1","p3","p5","p7")))

sharedInt <- getSharedInteraction(intM)