SLGI (version 1.32.0)

hyperG: Hypergeometric test

Description

a hypergeometric test for genetic interaction data.

Usage

hyperG(data, nbTested, universe)

Arguments

data

Matrix with 2 columns the first one corresponds to the number of interactions per pair of interacting complexes and the second one to number of tested interactions. This could be the first two columns resulting from a call to the test2Interact function.

nbTested

Number of interacting pairs

universe

Total Number of tested pairs

See Also

phyper

Examples

## Create matrix interaction x tested matrix
interact <-  c(1, 3, 2, 2, 6, 5, 2, 4, 1, 3)
tested <-  c(3, 3, 5, 4, 8, 5, 3, 4, 2, 3)
mat <- cbind(interact, tested)

## Perform test
res <- hyperG(mat, 1000, 10000)
summary(res$P)