SLGI (version 1.32.0)

sharedBy: Find the gene pairs that share a domain.

Description

sharedBy finds whether the given domain is in each of the elements of the domain list.

Usage

sharedBy(domainL)

Arguments

domainL

is a list, each element of the list is a vector of domains.

Value

A list with each element represent a domain, and the values of the element are the pairs that share this domain.

Details

sharedBy first remove all the elements with length 0 or have value 'NA'. Then apply the reverseSplit on the remaining list.

See Also

reverseSplit, domainDist, getSharedDomains

Examples

## Load PFAM and SMART domains shared between Tong's Synthetic lethal data
data(AtongFnDomain)
## Find pair that share identical domain
sharedBy(AtongFnDomain$SharedPfam[1:20])