Host

Host-class

Spatio-temporal information about Host.

Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID).
It allow sequence-space-time host and viral population data storage, indexation and querying.

Jean-Francois Rey

SMITIDstruct

Data Structure and Manipulations Tool for Host and Viral
Population

Host function

<dl class="dl-horizontal">
<dt><code>ID</code></dt><dd>Host identifier</dd></dl><dt><code>coordinates</code></dt><dd>Host coordinates in time (as sf)</dd><dt><code>states</code></dt><dd>Host States/Status (dob, Inf...)</dd><dt><code>sources</code></dt><dd>data.frame of time and host id who infected this host</dd><dt><code>offsprings</code></dt><dd>data.frame of time and host id who has been contamined by this host</dd><dt><code>ID_V_POP</code></dt><dd>data.frame of time and index of Viral population Observation</dd><dt><code>covariates</code></dt><dd>data.frame of time, cavariate and value of this host.</dd>

Host: Class Host

Description

Arguments

Slots

Details