SNAGEE (version 1.12.0)

SNAGEE-package: Signal-to-Noise Applied to Gene Expression Experiments

Description

Signal-to-Noise Applied to Gene Expression Experiments

Details

Package:

SNAGEE

Version:

0.99.0

Date:

2012-01-26

Depends:

R (>= 2.6.0)

Imports:

SNAGEEdata

Suggests:

ALL

Enhances:

parallel

License:

Artistic-2.0

URL:

http://fleming.ulb.ac.be/SNAGEE

Index:

qualStudy               Quality of a study
qualSample              Quality of samples in a study
toSnageeFormat          Turns an Eset to a list usable by SNAGEE

Examples

# Get the list of genes
geneList = getCC()$g;
# Create a random data set
d=list(genes=geneList, data=matrix(rnorm(length(geneList)*50),ncol=50));
# Calculate its quality (it's going to be very close to 0)
qualStudy(d, disattenuate=FALSE);
# Calcuate individual sample qualities
qs = qualSample(d);