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SNAGEE (version 1.8.0)

Signal-to-Noise applied to Gene Expression Experiments

Description

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

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Version

Version

1.8.0

License

Artistic-2.0

Maintainer

David Venet

Last Published

February 15th, 2017

Functions in SNAGEE (1.8.0)

qualSample

Quality of samples in a study
toSnageeFormat

Turns an Eset into a list
qualStudy

Quality of a study
SNAGEE-package

Signal-to-Noise Applied to Gene Expression Experiments