run_annotation

This function receives the path to the configuration file.
A list of variants is received and their information is checked on various API servers.

To automated functional annotation of genetic variants and linked proxies. Linked SNPs in moderate to high linkage disequilibrium (e.g. r2>0.50) with the corresponding index SNPs will be selected for further analysis.

Alireza Ani

SNPannotator

Automated Functional Annotation of Genetic Variants and Linked
Proxies

Zoha Kamali

Ahmad Vaez

run_annotation function

<dl><dt>configurationFilePath</dt>
<dd>Character. The path to the configuration file.</dd>
<dt>verbose</dt>
<dd>Logical. Whether to display messages in the console.</dd></dl>

Arguments

Run the annotation pipeline on a list of variants — run_annotation

<dl>

<dt>configurationFilePath</dt>
<dd>Character. The path to the configuration file.</dd>


<dt>verbose</dt>
<dd>Logical. Whether to display messages in the console.</dd>

</dl>

run_annotation: Run the annotation pipeline on a list of variants

Description

Usage

Value

Arguments