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SNPassoc (version 1.4-9)

SNPassoc-internal: Internal SNPstat functions

Description

Internal SNPassoc functions

Usage

association.fit(var, dep, adj, quantitative, type, level, 
       nIndiv, genotypingRate = 0) 
extractPval(x)
extractPval.i(i,x,pos,models)
SNPHWE(x)
GenotypeRate(x)
haplo.inter.fit(geno, var2, dep, adj = NULL, fam, 
          haplo.freq.min, ...)
crea.lab(x,pos.ini,cex,dist)
orderChromosome(x)
togeno(f,sep=sep,lab=lab)
expandsetupSNP(o)
pvalTest(dataX,Y,quantitative,type,genotypingRate)
modelTest(X,Y,quantitative,type,genotypingRate)
assoc(y,x,test="lrt",quantitative)
## S3 method for class 'default':
codominant(o)
## S3 method for class 'default':
dominant(o)
## S3 method for class 'default':
recessive(o)
## S3 method for class 'default':
overdominant(o)
## S3 method for class 'default':
additive(o)

Arguments

Details

These are not to be called by the user