SNPs

SNPs.info.pos

SNPs data.frame contains selected SNPs and other clinical covariates for cases and controls 
    in a case-control study

 SNPs.info.pos data.frame contains the names of the SNPs included in the data set 'SNPs' including
    their chromosome and their genomic position

datasets

This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented.

Juan Gonz�lez

SNPassoc

SNPs-based whole genome association studies

SNPs function

Data obtained from our department. The reference and details will be supplied after being published.

SNPs: SNPs in a case-control study

Description

Usage

Arguments

source