SNPs-based whole genome association studies
Description
This package carries out most common analysis when
performing whole genome association studies. These analyses
include descriptive statistics and exploratory analysis of
missing values, calculation of Hardy-Weinberg equilibrium,
analysis of association based on generalized linear models
(either for quantitative or binary traits), and analysis of
multiple SNPs (haplotype and epistasis analysis). Permutation
test and related tests (sum statistic and truncated product)
are also implemented. Max-statistic and genetic risk-allele
score exact distributions are also possible to be estimated.